sbmlutils.parser

Parse Models in internal model format.

FIXME: no support for notes FIXME: no support for modelHistory

Module Contents

Functions

antimony_to_sbml(source)

Parse antimony model to SBML string.

antimony_to_model(source[, validate, promote, ...])

Parse antimony model.

sbml_to_model(source[, validate, promote, ...])

Parse SBML model.

Attributes

logger

omex_path

sbmlutils.parser.logger[source]
sbmlutils.parser.antimony_to_sbml(source)[source]

Parse antimony model to SBML string.

Parameters:

source (sbmlutils.factory.Union[sbmlutils.factory.Path, str]) –

Return type:

str

sbmlutils.parser.antimony_to_model(source, validate=False, promote=False, validation_options=None)[source]

Parse antimony model.

Parameters:

  • source (sbmlutils.factory.Union[sbmlutils.factory.Path, str]) –

  • validate (bool) –

  • promote (bool) –

  • validation_options (sbmlutils.factory.Optional[sbmlutils.validation.ValidationOptions]) –

Return type:

sbmlutils.factory.Model

sbmlutils.parser.sbml_to_model(source, validate=False, promote=False, validation_options=None)[source]

Parse SBML model.

Parameters:

  • source (sbmlutils.factory.Union[sbmlutils.factory.Path, str]) –

  • validate (bool) –

  • promote (bool) –

  • validation_options (sbmlutils.factory.Optional[sbmlutils.validation.ValidationOptions]) –

Return type:

sbmlutils.factory.Model

sbmlutils.parser.omex_path: sbmlutils.factory.Path[source]