Welcome to sbmlutils documentation!

sbmlutils: Python utilities for working with SBML models.

Source code available from https://github.com/matthiaskoenig/sbmlutils.

Contents:

• Overview
  • Introduction
  • Installation
  • Funding
• SBML creator
  • Create model
  • Units
  • SBML Levels and Versions
• SBML distrib
  • Assigning a distribution to a parameter
  • Using a normal distribution
  • Defining a truncated normal distribution
  • Defining conditional events
  • Overview of all distributions
  • Basic uncertainty example
  • Multiple uncertainties
  • Defining a random variable
  • Overview over UncertParameters and UncertSpans
  • Information on experimental parameters (SABIO-RK)
• SBML annotation
  • Annotate during model creation
  • Annotate existing model
• SBML converters
  • XPP to SBML
• SBML merge
• API Reference
  • sbmlutils

Indices and tables

• Index

• Module Index

• Search Page