sbmlutils.fbc.fbc

Helper functions for working with FBC and cobrapy models.

Module Contents

Functions

set_flux_bounds(reaction, lb, ub)

Set flux bounds on given reaction.

add_default_flux_bounds(doc[, lower, upper])

Add default flux bounds to SBMLDocument.

set_boundary_conditions_false(doc)

Set all boundaryConditions to False in the model.

Attributes

logger

sbmlutils.fbc.fbc.logger[source]
sbmlutils.fbc.fbc.set_flux_bounds(reaction, lb, ub)[source]

Set flux bounds on given reaction.

Parameters:

  • reaction (libsbml.Reaction) –

  • lb (float) –

  • ub (float) –

Return type:

None

sbmlutils.fbc.fbc.add_default_flux_bounds(doc, lower=-100.0, upper=100.0)[source]

Add default flux bounds to SBMLDocument.

Parameters:

  • doc (libsbml.SBMLDocument) – SBMLDocument

  • lower (float) – lower flux bound

  • upper (float) – upper flux bound

Returns:

Return type:

None

sbmlutils.fbc.fbc.set_boundary_conditions_false(doc)[source]

Set all boundaryConditions to False in the model.

Parameters:

doc (libsbml.SBMLDocument) –

Return type:

None