sbmlutils.resources

Resources for testing

Package Contents

Functions

all_distrib_paths()

Get distrib paths

sbml_paths_idfn(sbml_path)

Helper function to inject Path in tests name.

Attributes

RESOURCES_DIR

TESTDATA_DIR

EXAMPLES_DIR

OMEX_SHOWCASE

OMEX_COMPMODELS

OMEX_ICGMODEL

OMEX_OMEPRAZOLEMODEL

API_EXAMPLES_OMEX

MODELS_DIR

BASIC_SBML

DEMO_SBML

DEMO_SBML_NO_ANNOTATIONS

DEMO_ANNOTATIONS

GALACTOSE_SINGLECELL_SBML

GALACTOSE_SINGLECELL_SBML_NO_ANNOTATIONS

GALACTOSE_TISSUE_SBML

GALACTOSE_ANNOTATIONS

GLUCOSE_SBML

VDP_SBML

GZ_SBML

REPRESSILATOR_SBML

FBC_ECOLI_CORE_SBML

FBC_DIAUXIC_GROWTH_SBML

FBC_RECON3D_SBML

COMP_ICG_LIVER

COMP_ICG_BODY_FLAT

COMP_ICG_BODY

COMP_DEX_CYP2D6

COMP_DEX_LIVER

COMP_DEX_INTESTINE

COMP_DEX_KIDNEY

COMP_DEX_BODY_FLAT

COMP_DEX_BODY

DISTRIB_DISTRIBUTIONS_SBML

DISTRIB_UNCERTAINTIES_SBML

DISTRIB_COMP_SBML

DISTRIB_COMP_FLAT_SBML

distrib_paths

dfba_paths

interpolation_paths

example_ids

API_EXAMPLES_MODEL

ALL_SBML_PATHS

BIOMODELS_CURATED_PATH

SBML_TESTSUITE_DIR

sbmlutils.resources.RESOURCES_DIR[source]
sbmlutils.resources.TESTDATA_DIR[source]
sbmlutils.resources.EXAMPLES_DIR: pathlib.Path[source]
sbmlutils.resources.OMEX_SHOWCASE[source]
sbmlutils.resources.OMEX_COMPMODELS[source]
sbmlutils.resources.OMEX_ICGMODEL[source]
sbmlutils.resources.OMEX_OMEPRAZOLEMODEL[source]
sbmlutils.resources.API_EXAMPLES_OMEX[source]
sbmlutils.resources.MODELS_DIR[source]
sbmlutils.resources.BASIC_SBML[source]
sbmlutils.resources.DEMO_SBML[source]
sbmlutils.resources.DEMO_SBML_NO_ANNOTATIONS[source]
sbmlutils.resources.DEMO_ANNOTATIONS[source]
sbmlutils.resources.GALACTOSE_SINGLECELL_SBML[source]
sbmlutils.resources.GALACTOSE_SINGLECELL_SBML_NO_ANNOTATIONS[source]
sbmlutils.resources.GALACTOSE_TISSUE_SBML[source]
sbmlutils.resources.GALACTOSE_ANNOTATIONS[source]
sbmlutils.resources.GLUCOSE_SBML[source]
sbmlutils.resources.VDP_SBML[source]
sbmlutils.resources.GZ_SBML[source]
sbmlutils.resources.REPRESSILATOR_SBML[source]
sbmlutils.resources.FBC_ECOLI_CORE_SBML[source]
sbmlutils.resources.FBC_DIAUXIC_GROWTH_SBML[source]
sbmlutils.resources.FBC_RECON3D_SBML[source]
sbmlutils.resources.COMP_ICG_LIVER[source]
sbmlutils.resources.COMP_ICG_BODY_FLAT[source]
sbmlutils.resources.COMP_ICG_BODY[source]
sbmlutils.resources.COMP_DEX_CYP2D6[source]
sbmlutils.resources.COMP_DEX_LIVER[source]
sbmlutils.resources.COMP_DEX_INTESTINE[source]
sbmlutils.resources.COMP_DEX_KIDNEY[source]
sbmlutils.resources.COMP_DEX_BODY_FLAT[source]
sbmlutils.resources.COMP_DEX_BODY[source]
sbmlutils.resources.DISTRIB_DISTRIBUTIONS_SBML[source]
sbmlutils.resources.DISTRIB_UNCERTAINTIES_SBML[source]
sbmlutils.resources.DISTRIB_COMP_SBML[source]
sbmlutils.resources.DISTRIB_COMP_FLAT_SBML[source]
sbmlutils.resources.all_distrib_paths()[source]

Get distrib paths

Return type:

List[pathlib.Path]

sbmlutils.resources.distrib_paths[source]
sbmlutils.resources.dfba_paths[source]
sbmlutils.resources.interpolation_paths[source]
sbmlutils.resources.example_ids = ['algebraic_rule', 'annotation', 'assignment', 'distrib_comp', 'distrib_comp_flat',...[source]
sbmlutils.resources.API_EXAMPLES_MODEL[source]
sbmlutils.resources.ALL_SBML_PATHS[source]
sbmlutils.resources.BIOMODELS_CURATED_PATH[source]
sbmlutils.resources.sbml_paths_idfn(sbml_path)[source]

Helper function to inject Path in tests name.

Parameters:

sbml_path (pathlib.Path) –

Return type:

str

sbmlutils.resources.SBML_TESTSUITE_DIR[source]