sbmlutils

sbmlutils - Python utilities for SBML.

Subpackages

• sbmlutils.comp
  • sbmlutils.comp.comp
  • sbmlutils.comp.flatten
• sbmlutils.converters
  • sbmlutils.converters.copasi
  • sbmlutils.converters.mathml
  • sbmlutils.converters.odefac
  • sbmlutils.converters.xpp
  • sbmlutils.converters.xpp_examples
  • sbmlutils.converters.xpp_helpers
• sbmlutils.data
  • sbmlutils.data.interpolation
  • sbmlutils.data.interpolation_example
  • sbmlutils.data.interpolation_pancreas
• sbmlutils.distrib
  • sbmlutils.distrib.distrib_examples
  • sbmlutils.distrib.distrib_packages
• sbmlutils.examples
  • sbmlutils.examples.combine_archive
    • sbmlutils.examples.combine_archive.omex_models
  • sbmlutils.examples.dallaman
    • sbmlutils.examples.dallaman.dallaman
  • sbmlutils.examples.demo
    • sbmlutils.examples.demo.demo
  • sbmlutils.examples.distrib
    • sbmlutils.examples.distrib.distrib_comp
    • sbmlutils.examples.distrib.distrib_distributions
    • sbmlutils.examples.distrib.distrib_uncertainties
  • sbmlutils.examples.fbc
    • sbmlutils.examples.fbc.fbc_key_value_pair
    • sbmlutils.examples.fbc.fbc_mass_charge
    • sbmlutils.examples.fbc.fbc_userdefinedconstraints
    • sbmlutils.examples.fbc.fbc_v2
    • sbmlutils.examples.fbc.fbc_v3
    • sbmlutils.examples.fbc.fbc_version3
  • sbmlutils.examples.icg
    • sbmlutils.examples.icg.annotations
    • sbmlutils.examples.icg.factory
    • sbmlutils.examples.icg.model_body
    • sbmlutils.examples.icg.model_liver
    • sbmlutils.examples.icg.templates
  • sbmlutils.examples.merge_models
    • sbmlutils.examples.merge_models.merge_models
  • sbmlutils.examples.tiny
    • sbmlutils.examples.tiny.simulation
    • sbmlutils.examples.tiny.tiny
  • sbmlutils.examples.tutorial
    • sbmlutils.examples.tutorial.linear_chain
    • sbmlutils.examples.tutorial.minimal_model
    • sbmlutils.examples.tutorial.minimal_model_annotations
    • sbmlutils.examples.tutorial.minimal_model_comp
    • sbmlutils.examples.tutorial.model_antimony
    • sbmlutils.examples.tutorial.model_composition
    • sbmlutils.examples.tutorial.random_network
  • sbmlutils.examples.van_der_pol
  • sbmlutils.examples.algebraic_rule
  • sbmlutils.examples.annotation
  • sbmlutils.examples.assignment
  • sbmlutils.examples.compartment_species_reaction
  • sbmlutils.examples.model
  • sbmlutils.examples.model_definitions
  • sbmlutils.examples.multiple_substance_units
  • sbmlutils.examples.notes
  • sbmlutils.examples.parameter
  • sbmlutils.examples.reaction
  • sbmlutils.examples.reaction_with_units
  • sbmlutils.examples.species
  • sbmlutils.examples.templates
  • sbmlutils.examples.unit_definitions
  • sbmlutils.examples.units_namespace
• sbmlutils.fbc
  • sbmlutils.fbc.cobra
  • sbmlutils.fbc.fbc
• sbmlutils.io
  • sbmlutils.io.sbml
• sbmlutils.layout
  • sbmlutils.layout.layout
• sbmlutils.manipulation
  • sbmlutils.manipulation.merge
• sbmlutils.metadata
  • sbmlutils.metadata.annotator
  • sbmlutils.metadata.miriam
  • sbmlutils.metadata.sbo
• sbmlutils.report
  • sbmlutils.report.api
  • sbmlutils.report.api_examples
  • sbmlutils.report.mathml
  • sbmlutils.report.sbmlinfo
  • sbmlutils.report.sbmlreport
  • sbmlutils.report.units
• sbmlutils.resources

Submodules

• sbmlutils.biomodels
• sbmlutils.console
• sbmlutils.cytoscape
• sbmlutils.factory
• sbmlutils.log
• sbmlutils.notes
• sbmlutils.parser
• sbmlutils.reaction_equation
• sbmlutils.utils
• sbmlutils.validation

Package Contents

sbmlutils.__author__ = Matthias König

sbmlutils.__version__ = 0.8.1

sbmlutils.program_name = sbmlutils

sbmlutils.RESOURCES_DIR