sbmlutils.converters.mathml
¶
Helper functions for evaluation of mathml expressions.
In this namespace all the possible names occuring in formula strings have to be defined.
- In build in python are
*, /, +, - and, or, not
Module Contents¶
Functions¶
|
Product calculation. |
|
Square calculation. |
|
Root calculation. |
|
XOR calculation. |
|
Piecewise calculation. |
|
Create evaluable python formula string from ASTNode. |
|
Evaluate MathML string with given set of variable and parameter values. |
Attributes¶
- sbmlutils.converters.mathml.product(*args)[source]¶
Product calculation.
- Parameters
args (float) –
- Return type
float
- sbmlutils.converters.mathml.sqr(x)[source]¶
Square calculation.
- Parameters
x (float) –
- Return type
float
- sbmlutils.converters.mathml.root(a, b)[source]¶
Root calculation.
- Parameters
a (float) –
b (float) –
- Return type
float
- sbmlutils.converters.mathml.xor(*args)[source]¶
XOR calculation.
- Parameters
args (float) –
- Return type
int
- sbmlutils.converters.mathml.piecewise(*args)[source]¶
Piecewise calculation.
- Parameters
args (float) –
- Return type
float
- sbmlutils.converters.mathml.evaluableMathML(astnode, variables=None)[source]¶
Create evaluable python formula string from ASTNode.
- Parameters
astnode (libsbml.ASTNode) –
variables (Optional[Dict]) –
- Return type
str
- sbmlutils.converters.mathml.evaluateMathML(astnode, variables=None)[source]¶
Evaluate MathML string with given set of variable and parameter values.
- Parameters
astnode (libsbml.ASTNode) – astnode of MathML string
variables (Optional[Dict]) – dictionary of var : value
- Returns
value of evaluated MathML
- Return type
Any
- sbmlutils.converters.mathml.mathmlStr = Multiline-String[source]¶
Show Value
1 <math xmlns="http://www.w3.org/1998/Math/MathML"> 2 <piecewise> 3 <piece> 4 <cn type="integer"> 8 </cn> 5 <apply> 6 <lt/> 7 <ci> x </ci> 8 <cn type="integer"> 4 </cn> 9 </apply> 10 </piece> 11 <piece> 12 <cn> 0.1 </cn> 13 <apply> 14 <and/> 15 <apply> 16 <leq/> 17 <cn type="integer"> 4 </cn> 18 <ci> x </ci> 19 </apply> 20 <apply> 21 <lt/> 22 <ci> x </ci> 23 <cn type="integer"> 6 </cn> 24 </apply> 25 </apply> 26 </piece> 27 <otherwise> 28 <cn type="integer"> 8 </cn> 29 </otherwise> 30 </piecewise> 31 </math>